Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs35567307 chr10:915804 G/C 3.76E-8 507 21.7 24.52 14.15 KM Plot
LGG rs35604804 chr11:51575715 C/A 0 504 23.82 18.1 0.38 KM Plot
LGG rs35637113 chr10:874149 G/C 5.06E-7 506 21.7 24.52 14.43 KM Plot
LGG rs35666723 chr10:867346 A/G 3.92E-6 508 21.7 25.83 14.43 KM Plot
LGG rs35667562 chr10:950630 G/A 1.19E-6 495 21.7 24.53 14.47 KM Plot
LGG rs35779437 chr8:6184152 A/T 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs35791906 chr8:6184679 T/A 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs35825568 chr10:950760 C/T 9.44E-6 487 22.57 24.07 14.5 KM Plot
LGG rs35831095 chr8:143444454 C/T 1.37E-5 500 23.63 19.57 3.7 KM Plot
LGG rs35836292 chr8:6184851 T/G 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs35957139 chr10:884889 C/T 3.57E-6 508 21.7 25.83 14.43 KM Plot
LGG rs35968821 chr10:910225 A/G 4.93E-8 508 21.77 24.37 14.15 KM Plot
LGG rs36109891 chr8:6184150 A/G 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs36133389 chr14:102191538 T/C 1.27E-14 500 21.77 27.9 5.4 KM Plot
LGG rs370062232 chr7:20707469 C/G 3.15E-5 490 23.8 20.98 14.27 KM Plot